Capturing the
world of science.
Unlock
the potential of imaging in the Helmholtz Association across all research domains and along the entire imaging pipeline.
Improve
leverage and accessibility of the innovative imaging modalities, applications and data treasures.
Enable
the delivery of generalizable imaging solutions.
Helmholtz Imaging empowers and supports scientists in all aspects of imaging:
News, Events & Jobs
Helmholtz Imaging Newsletter Issue No. 20
Stay informed with the latest from Helmholtz Imaging! Explore innovative AI-driven imaging tools and new methods, funding, training and job opportunities. Register and submit your abstract for the Helmholtz Imaging Conference, discover the latest from our partner platforms, and much more.
Helmholtz Imaging Conference 2025: Registration & Call for Abstract Open
The Helmholtz Imaging Conference is back for 2025, scheduled to take place from June 25-27 in Potsdam. Registration & call for abstracts are OPEN. Join us in June!
nnInteractive: A Breakthrough in AI-Driven 3D Interactive Segmentation
We’re proud to present nnInteractive, a cutting-edge AI-driven 3D interactive segmentation tool designed to revolutionize volumetric annotation in imaging. Try it out today in Napari or MITK!Portfolio
Support Hub
The Support Hub is your gateway to the world of Helmholtz Imaging! Simply send an e-mail to support@helmholtz-imaging.de and we will help you out. Any request is welcome, whether it is a question about administrative or imaging-related matters, consulting requests, project support, Helmholtz Imaging Collaborations or access to our portfolio.
CONNECT
Helmholtz Imaging CONNECT is the heart of the Helmholtz Imaging Network. Get to know the imaging experts from the Helmholtz Association, explore the amazing portfolio of cutting-edge instruments from satellites to synchrotrons, dive into the exciting world of imaging applications. Helmholtz Imaging CONNECT facilitates finding partners and collaborators for innovative projects, with just the right complementary expertise necessary to conduct research for grand challenges.
We want you! If you are affiliated to one of the Helmholtz Centers, we invite you to add your profile, your modalities and your applications to the website. Be Helmholtz Imaging!
Collaborations
Struggling with an imaging-related project? Apply for a Helmholtz Imaging Collaboration and tap into the expertise of Helmholtz Imaging! Collaborations enable you to team up with one of our units for an elongated period of time (up to 6 months or even longer) to work on a project together. Whether you require support in (AI-based) image analysis, image reconstruction, annotation, data management, software solutions, addressing inverse problems, developing novel imaging modalities, 3D visualization and more – we are your partner.
Solutions
Helmholtz Imaging Solutions provide software driven strategies for solving common problems across imaging domains and tools. In reality, being aware of a software solution for a scientific problem is often followed by a time-consuming process of figuring out how to install the specific tool and how to precisely use it to reproduce a published result. We provide a framework to unify and simplify this process. Additionally, we curate a catalog of Helmholtz Imaging Solutions developed within our community.
Research
Projects
Helmholtz Imaging Projects are granted to cross-disciplinary research teams that identify innovative research topics at the intersection of imaging and information & data science, initiate cross-cutting research collaborations, and thus underpin the growth of the Helmholtz Imaging network. Discover our outstanding projects or apply for the annual call.
Publications
Helmholtz Imaging captures the world of science. Discover unique data sets, ready-to-use software tools, and top-level research papers.
The platform’s output originates from our research groups as well as from projects funded by us, theses supervised by us and collaborations initiated through us. Altogether, our publications showcase the whole diversity of Helmholtz Imaging.
Highlight Projects
GLAM: Generative lung architecture modeling
This project is developing generative methods for designing bio-printable lung tissues across a spectrum of disease severity in the specific context of mouse and human lung disease.
Fast-EMI
Deep-learning assisted fast in situ 4D electron microscope imaging
COMFORT
COMFORT aims to achieve breakthroughs in developing compact, flexible, and robust machine learning models for image, audio, and network data. In doing so, its application-oriented research program will advance the mathematical understanding of machine learning at the intersection of effectiveness and robustness.
X-BRAIN
Cross-modality representation learning for brain analysis and data integration
Image: X-BRAIN
FONDA: Dependability, Adaptability and Uncertainty Quantification for Data Analysis Workflows in Large-Scale Biomedical Image Analysis
The project aims to enhance infrastructures for machine learning (ML)-intensive DAWs in advanced biomedical imaging applications.Image: Envato Elements
3DforestSIF
Understanding the solar-induced fluorescence (SIF) signal of natural, complex tree canopies
3DforestSIF seeks to correct airborne solar-induced fluorescence (SIF) data from forests for canopy structural and illumination effects, providing valuable insights for the early detection of forest stress.
CLARITY
CineMR-guided ML-driven Breathing Models for Adaptive Radiotherapy
Dose-escalated radiotherapy of lung cancers requires precise monitoring of lesions and nearby organs at risk. Current methods are able to track ultra-central lesions but neglect their deforming vicinity, risking unacceptable toxicity to aortico-pulmonary structures. AI-based anomaly detection and generative AI models can address both requirements in real-time.
BrainShapes
Laplace-Beltrami shape descriptors of brain structures: Comparative optimization and genetic dissection
The project explores the 3D structure of the human brain by creating a digital 'map' of the brain and examining its unique genetic properties, potentially linking genetic variations to brain disorders.
Helmholtz Imaging’s mission is to unlock the potential of imaging in the Helmholtz Association. Image data provide a substantial part of data being generated in scientific research. Helmholtz Imaging is the overarching platform to better leverage and make accessible to everyone the innovative modalities, methodological richness, and data treasures of the Helmholtz Association.
For us, imaging is the whole process from data acquisition and data preparation to data management and data analysis. For this reason, we feel that the anchoring at the three host centers DESY, DKFZ and MDC is optimal to serve the entire imaging pipeline and jointly generate the greatest possible added value for the entire association. We are dedicated to making Helmholtz Imaging an internationally visible platform for imaging research.
Helmholtz Imaging is one of five platforms (HIDA, HIFIS, Helmholtz.AI and HMC) initiated by the Helmholtz Information & Data Science Incubator.
People of Helmholtz Imaging
Prof. Dr. Martin Burger
Prof. Dr. Dagmar Kainmüller
Dr. Philipp Heuser
Dr. rer. nat. Fabian Isensee
Dr. Annika Reinke
Deborah Schmidt
